Happened to my previous Jap ride. Could hear faint outside noise when travelling, occasional vibration sound from the rear. The whole rear windscreen was dislodged. The rubber seal no more glue (dried up or something). Changed to a new seal with glue and all ok.
How did I find out? Close the rear passenger door fast and firmly, and could see the rear windscreen 'pop' up and back due to the air pressure build up when closing the door!